Web97 rows · Jan 1, 2009 · One example of the approaches for obtaining reliable and more accurate TM topology prediction data is the ConPred program (Ikeda et al. 2002; Arai et … WebJan 1, 2001 · The ConPred II server will return the predicted TM topology models and graphical representations of their contents (hydropathy plots, helical wheel diagrams of predicted TMSs and snake-like diagrams).
Transmembrane regions identified by the ConPred II …
WebJul 12, 2010 · The secondary structure of each Mrp protein was predicted by ConPred II, HMMTOP, and TMHMM (all available on the World Wide Web). All three programs predicted the number of TMSs of MrpB, MrpC, MrpD, MrpF, and MrpG to be 4, 3, 14, 3, and 3, respectively, as depicted in Fig. 1. HMMTOP and TMHMM predicted the number of … WebMar 13, 2009 · The prediction accuracy of ConPred II is relatively high (∼99%), thus improving the TM topology accuracy by ∼11% over other methods [16]. Using ConPred II, the complete PfSPP amino acid is predicted to have 10 TM domains with preference for a cytosolic orientation of both the N- and the C-termini (Fig. 1 C). Two intramembrane … garden hose reels with auto rewind
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WebApr 8, 2008 · According to the authors, ConPred II has the highest accuracy (69.9) for predicting both the number and the location of the TMSs. The sequences were first evaluated by DetecSig (Lao and Shimizu 2001 ) to remove any signal peptides prior to extracting TMSs because these sequences are also highly hydrophobic and have been … WebMar 1, 2004 · The ConPred II server will return the predicted TM topology models and graphical representations of their contents (hydropathy plots, helical wheel diagrams of predicted TMSs and snake-like diagrams). Webdetermined by SignalP3.0 [12], ConPred II [13], and PSORTb v.2.0 [14]. COG assignment was performed using RPS-BLAST againt CDD (conserved domain da-tabase) [15] with E-value 1E-3. Protein homology was determined using BlastP with identity > 20% and length coverage > 30%, and alignment of protein sequences was performed using ClustalW. 2.2. garden hose reels with hose